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DNA Barcoding
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Bioinformatics
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DNA Barcoding
DNA Barcoding
Documents
pptx
- Power point presentation as pptx
pdf
- Understanding Evolutionary Trees
pdf
- DNA Barcodes: Genes, Genomics, and Bioinformatics
pdf
- DNA barcoding detects contamination and substitutions in North American herbal products
pdf
- What is Bioinformatics
Videos
Video 1
- Introduction to Bioinformatics and DNA Barcoding
Video 2
- Installing Software (if necessary)
Video 3
- Trim reads withFinchTV
Video 4
- Assemble reads with BioEdit
Video 5
- Adding annotations to reads using blastx
Video 6
- Translating reads with Emboss Transeq
Video 7
- Molecular phylogenetic analysis using MEGA
Sequence Data Sets
zip file
- Ant Data, 10/20/2015
zip file
- Collection of trace files
zip file
- Collection of trimmed reads in fasta format
zip file
- Collection of assembled forward and reverse reads
fasta file
- multi-fasta file of assembled reads
fasta file
- multi-fasta file of assembled reads with annotations from blastn search
fasta file
- multi-fasta file of amino acid sequences from transeq
Bioinformatics websites
FinchTV
- DNA trace viewer (download and install)
BioEdit
- Biological sequence alignment editor (download and install)
Contig Assembly Program 3 (CAP3)
- Online contig assembly program for assembling reads.
Basic Local Alignment Search Tool (BLAST)
- sequence similarity search tool
EMBOSS Transeq
- sequence translation tool
Molecular Evolutionary Genetics Analysis (MEGA)
- Molecular Phylogenetics Analysis Software (download and install)
Jalview
- Java based multiple sequence alignment editor
EMBOSS
- online resource for various bioinformatics applications
NCBI homepage
- A resource for bioinformatics tools and databases
Introduction to DNA Barcoding and Bioinformatics
This module will introduce students to bioinformatics resources used in barcoding.
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